Target folder: /home/hflavio/Google-drive/workshops_and_presentations/2024-09_OTN/workshop_materials/dataset/2017
Timestamp: 2024-07-24 12:49:21.706166
Number of target tags: 99
Number of listed receivers: 13 (of which 0 had no detections)
Data time range: 2017-04-12 09:20:23 to 2017-06-13 04:37:34 (Europe/London).
Percentage of post-release valid detections: 19.23%
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Arrays with the same background belong to the same section. Release sites are marked with “R.S.”. Arrays connected with an arrow indicate that the animals can only pass in one direction.
| Station.name | Latitude | Longitude | Array | Section | Standard.name | x.29902 | y.29902 |
|---|---|---|---|---|---|---|---|
| Bellisle | 55.1095 | -6.44540 | A1 | River | St.1 | 299262 | 430242 |
| Bush Hydro Int. | 55.1963 | -6.52610 | A2 | River | St.2 | 293908 | 439793 |
| Leap Upstream | 55.1967 | -6.52615 | A2 | River | St.3 | 293904 | 439837 |
| smolt layde | 55.2014 | -6.52430 | A3 | River | St.4 | 294010 | 440363 |
| S. works Rep | 55.2104 | -6.53170 | A4 | River | St.5 | 293518 | 441355 |
| Golf Course | 55.2196 | -6.53190 | A5 | River | St.6 | 293484 | 442379 |
| Runkerry bay 1 | 55.2216 | -6.54160 | A6 | Sea | St.7 | 292862 | 442588 |
| Runkerry bay 2 | 55.2243 | -6.54180 | A6 | Sea | St.8 | 292843 | 442889 |
| Runkerry bay 3 | 55.2263 | -6.53890 | A6 | Sea | St.9 | 293023 | 443115 |
| Runkerry bay 4 | 55.2280 | -6.53610 | A6 | Sea | St.10 | 293197 | 443308 |
| Outer bay 1 | 55.2234 | -6.55560 | A7 | Sea | St.11 | 291967 | 442770 |
| Outer bay 2 | 55.2261 | -6.55740 | A7 | Sea | St.12 | 291846 | 443068 |
| Outer bay 3 | 55.2285 | -6.55530 | A7 | Sea | St.13 | 291974 | 443338 |
| Receiver | Array | Station.name | Standard.name | Start | Stop |
|---|---|---|---|---|---|
| 102881 | A4 | S. works Rep | St.5 | 2017-01-01 00:00:01 | 2018-01-01 00:00:01 |
| 102883 | A2 | Bush Hydro Int. | St.2 | 2017-01-01 00:00:01 | 2018-01-01 00:00:01 |
| 107157 | A6 | Runkerry bay 4 | St.10 | 2017-01-01 00:00:01 | 2018-01-01 00:00:01 |
| 108999 | A6 | Runkerry bay 3 | St.9 | 2017-01-01 00:00:01 | 2018-01-01 00:00:01 |
| 109004 | A6 | Runkerry bay 2 | St.8 | 2017-01-01 00:00:01 | 2018-01-01 00:00:01 |
| 111468 | A2 | Leap Upstream | St.3 | 2017-01-01 00:00:01 | 2018-01-01 00:00:01 |
| 126671 | A1 | Bellisle | St.1 | 2017-01-01 00:00:01 | 2018-01-01 00:00:01 |
| 128987 | A3 | smolt layde | St.4 | 2017-01-01 00:00:01 | 2018-01-01 00:00:01 |
| 128988 | A5 | Golf Course | St.6 | 2017-01-01 00:00:01 | 2018-01-01 00:00:01 |
| 128992 | A6 | Runkerry bay 1 | St.7 | 2017-01-01 00:00:01 | 2018-01-01 00:00:01 |
| 546169 | A7 | Outer bay 2 | St.12 | 2017-01-01 00:00:01 | 2018-01-01 00:00:01 |
| 546170 | A7 | Outer bay 1 | St.11 | 2017-01-01 00:00:01 | 2018-01-01 00:00:01 |
| 546646 | A7 | Outer bay 3 | St.13 | 2017-01-01 00:00:01 | 2018-01-01 00:00:01 |
| Station.name | Latitude | Longitude | Array | Type | Standard.name | x.29902 | y.29902 | n.Wild |
|---|---|---|---|---|---|---|---|---|
| Cross | 55.10060 | -6.4053 | A1 | Release | Cross | 301843 | 429309 | 30 |
| Trap | 55.20271 | -6.5231 | A4 | Release | Trap | 294084 | 440510 | 69 |
overall.CJS object. Auxiliary information can also be found in the matrices and arrays objects.
advEfficiency(results$overall.CJS) to obtain beta-drawn efficiency distributions (replace results with the name of the object where you saved the analysis).
Individuals detected and estimated
| A1 | A2 | A3 | A4 | A5 | A6 | A7 | |
|---|---|---|---|---|---|---|---|
| detected | 24 | 16 | 16 | 8 | 50 | 37 | 19 |
| here plus on peers | 16 | 16 | 14 | 8 | 38 | 17 | - |
| not here but on peers | 0 | 0 | 0 | 43 | 1 | 2 | - |
| known | 24 | 16 | 16 | 51 | 51 | 39 | 19 |
| estimated | 24 | 16 | 16 | 51 | 51 | 41 | - |
Array efficiency
Note: These values already include any intra-array efficiency estimates that have been requested.
| A1 | A2 | A3 | A4 | A5 | A6 | A7 | |
|---|---|---|---|---|---|---|---|
| efficiency | 100% | 100% | 100% | 15.7% | 97.4% | 89.5% | - |
Warning: 'speed.warning'/'speed.error' were not set, skipping speed checks.
Warning: Tag R64K-2764 (5/64) was detected 233 times at stations less than 1.5 km apart in array 'A4' (St.5), over 26.51 days and then disappeared. Could it be inactive?
Warning: Tag R64K-2776 (13/64) was detected 47608 times at stations less than 1.5 km apart in array 'A6' (St.7, St.8), over 40.32 days and then disappeared. Could it be inactive?
Warning: Tag R64K-2791 (21/64) jumped through 5 arrays from release to first valid event (Release -> A6).
Warning: Tag R64K-2791 (21/64) jumped through 4 arrays in valid events 1 -> 2 (A6 -> A1).
Warning: Tag R64K-2791 (21/64) jumped through 2 arrays in valid events 4 -> 5 (A3 -> A6).
Warning: Tag R64K-2791 (21/64) was detected 4 times at stations less than 1.5 km apart in array 'A6' (St.7), over 11.57 days and then disappeared. Could it be inactive?
Warning: Tag R64K-2792 (22/64) jumped through 4 arrays from release to first valid event (Release -> A5).
Warning: Tag R64K-2792 (22/64) jumped through 3 arrays in valid events 1 -> 2 (A5 -> A1).
Warning: Tag R64K-2811 (38/64) was detected 11746 times at stations less than 1.5 km apart in array 'A4' (St.5), over 27.77 days and then disappeared. Could it be inactive?
Warning: Tag R64K-2851 (60/64) has less than 2 detections in total. Discarding this tag.
Warning: Inter-section backwards movements were detected for tag R64K-2849 (58/64) and the last events are not ordered!
No comments were included during the analysis.
section.overview object.
| Total | Disap..in.River | Migrated.to.Sea | Disap..in.Sea | Succeeded | |
|---|---|---|---|---|---|
| Wild | 99 | 48 | 51 | 12 | 39 |
status.df object (‘Very.last.array’ column).
Zoom in or open the figure in a new tab to clearly read the text within each circle.
overall.CJS object, and the data used in the tables is stored in the group.overview object. You can find detailed progressions per release site in the release.overview object.
Group: Wild
| Release | A1 | A2 | A3 | A4 | A5 | A6 | A7 | |
|---|---|---|---|---|---|---|---|---|
| detected | 99 | 24 | 16 | 16 | 8 | 50 | 37 | 19 |
| here plus on peers | - | 16 | 16 | 14 | 8 | 38 | 17 | - |
| not here but on peers | - | 0 | 0 | 0 | 43 | 1 | 2 | - |
| known | 99 | 24 | 16 | 16 | 51 | 51 | 39 | 19 |
| estimated | - | 24 | 16 | 16 | 51 | 51 | 41 | - |
| difference | - | 0 | 0 | 0 | 0 | 0 | 2 | - |
plotTimes() function.
times object.
options(actel.circular.scale = "linear") before running your analyses.
status.df object.
detections.y.axis argument.
section.order argument.
plotDetections() function.
plotMoves() function.
detections and movements objects (and respective valid counterparts).
Actel R package report.
Version: 1.3.0.9007
Target folder: /home/hflavio/Google-drive/workshops_and_presentations/2024-09_OTN/workshop_materials/dataset/2017
Timestamp: 2024-07-24 12:49:21.706166
Function: migration()
M: 'report' option has been activated.
M: Importing data. This process may take a while.
M: No Code.space column was found in the biometrics. Assigning code spaces based on detections.
M: Number of target tags: 99.
M: Matching detections with deployment periods.
M: Number of ALS: 13 (of which 0 had no detections)
M: Data time range: 2017-04-12 09:20:23 to 2017-06-13 04:37:34 (Europe/London).
M: File 'distances.csv' found, activating speed calculations.
M: Data successfully imported!
M: Creating movement records for the valid tags.
M: Checking movement events quality.
Warning: 'speed.warning'/'speed.error' were not set, skipping speed checks.
Warning: Tag R64K-2764 (5/64) was detected 233 times at stations less than 1.5 km apart in array 'A4' (St.5), over 26.51 days and then disappeared. Could it be inactive?
M: ALL movement events from tag R64K-2764 were rendered invalid per user command.
Warning: Tag R64K-2776 (13/64) was detected 47608 times at stations less than 1.5 km apart in array 'A6' (St.7, St.8), over 40.32 days and then disappeared. Could it be inactive?
M: 15 movement event(s) from tag R64K-2776 were rendered invalid per user command.
Warning: Tag R64K-2791 (21/64) jumped through 5 arrays from release to first valid event (Release -> A6).
Warning: Tag R64K-2791 (21/64) jumped through 4 arrays in valid events 1 -> 2 (A6 -> A1).
Warning: Tag R64K-2791 (21/64) jumped through 2 arrays in valid events 4 -> 5 (A3 -> A6).
M: Movement event(s) 1 from tag R64K-2791 were rendered invalid per user command.
Warning: Tag R64K-2791 (21/64) was detected 4 times at stations less than 1.5 km apart in array 'A6' (St.7), over 11.57 days and then disappeared. Could it be inactive?
Warning: Tag R64K-2792 (22/64) jumped through 4 arrays from release to first valid event (Release -> A5).
Warning: Tag R64K-2792 (22/64) jumped through 3 arrays in valid events 1 -> 2 (A5 -> A1).
M: Movement event(s) 1 from tag R64K-2792 were rendered invalid per user command.
Warning: Tag R64K-2811 (38/64) was detected 11746 times at stations less than 1.5 km apart in array 'A4' (St.5), over 27.77 days and then disappeared. Could it be inactive?
M: ALL movement events from tag R64K-2811 were rendered invalid per user command.
Warning: Tag R64K-2851 (60/64) has less than 2 detections in total. Discarding this tag.
M: Compiling and checking section movements for the valid tags.
Warning: Inter-section backwards movements were detected for tag R64K-2849 (58/64) and the last events are not ordered!
M: Movement event(s) 3 from tag R64K-2849 were rendered invalid per user command.
M: Rendering 1 array movement(s) invalid for tag R64K-2849 as the respective section movements were discarded by the user.
M: Filtering valid array movements.
M: Filtering valid section movements.
M: Compiling migration timetable.
M: Compiling summary information tables.
M: Calculating array efficiency.
M: Saving results as 'actel_migration_results.RData'.
M: Producing the report.
M: Drawing individual detection graphics.
M: Analysis completed!
-------------------
User interventions:
-------------------
y # save strays?
y # invalidate/expand moves in R64K-2764?
1:23
y # confirm?
y # invalidate/expand moves in R64K-2776?
3:17
y # confirm?
n # invalidate more?
y # invalidate/expand moves in R64K-2791?
1
y # confirm?
n # invalidate more?
n # invalidate/expand moves in R64K-2791?
y # invalidate/expand moves in R64K-2792?
1
y # confirm?
n # invalidate more?
y # invalidate/expand moves in R64K-2811?
1:69
y # confirm?
y # invalidate/expand moves in R64K-2849?
3
y # confirm?
n # invalidate more?
y # save results?
-------------------
Migration function call:
-------------------
migration(tz = 'Europe/London', section.order = NULL, datapack = NULL, success.arrays = c('A6', 'A7'), max.interval = 60, min.total.detections = 2, min.per.event = c(1, 1), start.time = NULL, stop.time = NULL, speed.method = 'last to first', speed.warning = NULL, speed.error = NULL, jump.warning = 2, jump.error = 3, inactive.warning = 5, inactive.error = 5, exclude.tags = NULL, override = NULL, report = TRUE, auto.open = TRUE, discard.orphans = FALSE, discard.first = NULL, save.detections = FALSE, if.last.skip.section = TRUE, replicates = NULL, disregard.parallels = TRUE, GUI = 'needed', save.tables.locally = FALSE, print.releases = TRUE, detections.y.axis = 'auto')
-------------------